rs190098 chr20:32999790 G>A
- Sequence
tgggaaagctaagctgtgttgtgc[G/A]aggtgggggtggtggctggaaaga
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- NFIA_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIA_HUMAN | n/a | 2.92 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.17 | 2.05 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood