rs190962 chr1:54488371 T>G
- Sequence
ccagcgcccgagcggagcgcgcgg[T/G]gggggtgggggcgcgcggcgcggg
- ASB in cell types
- HepG2 (hepatoblastoma) HCT-116 (colon carcinoma) neural cell GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN CDK8_HUMAN MAX_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.45 | -0.05 | 1.18 | n/a | n/a | |||
| CTCF_HUMAN | 1.30 | 0.68 | 1.11 | n/a | No Hit | |||
| CDK8_HUMAN | 1.42 | 0.18 | 1.00 | n/a | n/a | |||
| MAX_HUMAN | 1.29 | 0.58 | 1.09 | n/a | No Hit | |||
| RBM25_HUMAN | 2.35 | -1.27 | 2.00 | n/a | n/a |
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