rs190962 chr1:54488371 T>G

Sequence
ccagcgcccgagcggagcgcgcgg[T/G]gggggtgggggcgcgcggcgcggg
ASB in cell types
HepG2 (hepatoblastoma) HCT-116 (colon carcinoma) neural cell GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
RAD21_HUMAN CTCF_HUMAN CDK8_HUMAN MAX_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN 1.45 -0.05 3.3·10-61.00 1.18 n/a n/a
CTCF_HUMAN 1.30 0.68 1.3·10-40.95 1.11 n/a No Hit
CDK8_HUMAN 1.42 0.18 1.4·10-31.00 1.00 n/a n/a
MAX_HUMAN 1.29 0.58 0.011.00 1.09 n/a No Hit
RBM25_HUMAN 2.35 -1.27 0.021.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

No data available

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