rs191649 chr18:35498082 A>G

Sequence
gatgtcagcgggcgttgtcctgcc[A/G]ctcgggcgctctgggcgtgggcct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
BHE40_HUMAN HDAC1_HUMAN MNT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BHE40_HUMAN -4.45 2.66 1.002.1·10-3 1.50 n/a No Hit
HDAC1_HUMAN 0.28 2.69 1.006.3·10-3 2.38 n/a n/a
MNT_HUMAN -0.10 1.37 1.000.01 2.10 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration (geographic atrophy),  alzheimers disease
GTEx eQTL Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Whole_Blood

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