rs192612402 chr1:11908284 T>C
- Sequence
cttagcagggcttattttaagtgt[T/C]ttaaaaacagatgcgattccgtta
- ASB in cell types
- K562 (myelogenous leukemia) SUM159PT (Triple negative breast cancer) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- SPT5H_HUMAN BCLF1_HUMAN SMAD3_HUMAN NFIC_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 0.66 | -0.66 | 1.00 | n/a | n/a | |||
| BCLF1_HUMAN | 3.61 | 0.62 | 1.17 | n/a | n/a | |||
| SMAD3_HUMAN | 2.13 | n/a | 2.00 | n/a | No Hit | |||
| NFIC_HUMAN | 0.99 | -0.99 | 1.00 | n/a | No Hit | |||
| NCOR1_HUMAN | 0.61 | -0.30 | 1.17 | n/a | n/a |
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