rs193756 chr16:11232928 G>A

Sequence
ggaggaagctctgtcttcactttg[G/A]cagcaagcctgtagcctaggcatt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
SMCA5_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA5_HUMAN 2.63 -2.25 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease cystatin c in serum hypertension (early onset hypertension) ldl cholesterol psoriasis resistance to kuru in aged women despite likely exposure rheumatoid arthritis vitiligo
GTEx eQTL Adrenal_Gland Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Nucleus_accumbens_basal_ganglia Breast_Mammary_Tissue Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Muscle_Skeletal Nerve_Tibial Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid

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