rs1942765 chr18:73564334 G>T

Sequence
ccaggaagtttactccaactctat[G/T]tatgagacaatgagtaactactca
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN A2NVP9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 0.30 1.60 1.007.6·10-17 1.54 n/a No Hit
FOXA1_HUMAN 0.20 2.42 1.009.5·10-9 1.52 n/a No Hit
A2NVP9_HUMAN -3.95 2.56 1.008.9·10-3 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Pancreas,  Pituitary,  Thyroid

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