rs194503 chr7:90211770 G>A
- Sequence
cgttcctcgggccctcggcgccac[G/A]agctgtccgggcacgcagccccta
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) pancreas esophagus muscularis mucosa
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN LMBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.84 | 1.03 | 1.26 | 0.32 | Weak Concordant | |||
| ANDR_HUMAN | -3.93 | 2.56 | 2.00 | n/a | No Hit | |||
| LMBL2_HUMAN | 2.63 | -2.42 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, birth weight, fasting blood glucose, hdl cholesterol change with statins, longstanding arthritis, partial epilepsy, serum creatinine, spine bone mineral density (bmd)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood