rs195190 chr1:115194810 C>T
- Sequence
tcttgacagaaaatgggttttgcc[C/T]ggagccttaagattggaatgaggc
- ASB in cell types
- MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- GRHL2_HUMAN ARI1A_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | n/a | 2.30 | 2.00 | n/a | No Hit | |||
| ARI1A_HUMAN | n/a | 3.92 | 2.00 | n/a | n/a | |||
| FOXA1_HUMAN | -0.78 | 3.16 | 2.00 | n/a | No Hit |
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