rs1957290 chr14:92253613 A>G
- Sequence
cgtaggcggctcatttggggaccg[A/G]gacggccctcacctggccatgtgg
- ASB in cell types
- HCT-116 (colon carcinoma) T47D (invasive ductal carcinoma) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.10 | -0.38 | 1.25 | n/a | No Hit | |||
| RAD21_HUMAN | 1.98 | -1.83 | 1.17 | n/a | n/a | |||
| KDM5B_HUMAN | 2.50 | -2.08 | 1.50 | n/a | n/a |
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