rs1970194 chr1:31573960 T>C
- Sequence
aataagtcaatgagtcactaggag[T/C]cactaggaggcaaagggtcaaagg
- ASB in cell types
- K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells) HT29 (colon adenocarcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- NOTC1_HUMAN COT1_HUMAN NR1H3_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NOTC1_HUMAN | n/a | 1.92 | 2.50 | n/a | n/a | |||
| COT1_HUMAN | -0.87 | 1.77 | 1.00 | n/a | No Hit | |||
| NR1H3_HUMAN | 2.23 | n/a | 2.00 | -1.91 | Weak Concordant | |||
| TF65_HUMAN | 0.39 | 2.80 | 2.17 | n/a | No Hit | |||
| CTCF_HUMAN | -0.38 | 0.97 | 1.14 | 2.94 | Concordant |
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Motif analysis
