ADASTRA v5.1.3
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rs1971298
chr17:64082248
C
>
T
Sequence
gcagcaaacaaacaactcactaaa[C/T]caaaaacactctaggaaacaggaa
ASB in cell types
K562 (myelogenous leukemia)
HEK293 (embryonic kidney)
CTV-1 (Adult T acute lymphoblastic leukemia)
HEK293T (embryonic kidney)
ASB for transcription factors
ZN785_HUMAN
MEIS2_HUMAN
PKNX1_HUMAN
ZBT21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN785_HUMAN
3.32
n/a
3.0·10
-4
1.00
1.00
n/a
n/a
MEIS2_HUMAN
n/a
0.84
1.00
3.0·10
-4
2.00
n/a
No Hit
PKNX1_HUMAN
n/a
1.51
1.00
3.4·10
-3
2.00
n/a
No Hit
ZBT21_HUMAN
2.65
n/a
0.01
1.00
1.00
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
autism
,
birth weight
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Cells_Cultured_fibroblasts
,
Lung
,
Minor_Salivary_Gland
,
Nerve_Tibial
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)