rs197389 chr1:111755261 C>G
- Sequence
gatacgaacttgggagctgttagt[C/G]cagttccaggttccaattcaacgt
- ASB in cell types
- HEK293 (embryonic kidney) CD34+ hematopoietic stem cells-derived proerythroblasts 22RV1 (prostate carcinoma) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- GATA1_HUMAN ANDR_HUMAN ZN629_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 2.16 | -4.62 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.78 | -1.15 | 2.00 | n/a | No Hit | |||
| ZN629_HUMAN | n/a | 2.08 | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | -1.60 | 1.97 | 1.00 | n/a | No Hit | |||
| SPT5H_HUMAN | -0.25 | 1.19 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood