rs1981254 chr1:84408152 A>G
- Sequence
tgcttaatcagaaacttggttcca[A/G]aacaaccaagagaaataggaacat
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN TBP_HUMAN ANDR_HUMAN A2NVP9_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.70 | 0.33 | 1.62 | n/a | No Hit | |||
| TBP_HUMAN | 2.06 | -0.28 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.13 | 0.61 | 1.60 | n/a | No Hit | |||
| A2NVP9_HUMAN | 1.96 | -1.17 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Mucosa, Minor_Salivary_Gland, Muscle_Skeletal, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach