rs198820 chr6:26124015 G>A
- Sequence
tcttagttaattggaagacaaact[G/A]cacagttgtcatccgtgggcagag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) fetal bone marrow-derived mononuclear cells HepG2 (hepatoblastoma)
- ASB for transcription factors
- RBM25_HUMAN IKZF2_HUMAN ILF3_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 2.93 | 0.21 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | 2.74 | n/a | 1.00 | n/a | n/a | |||
| ILF3_HUMAN | 2.37 | n/a | 3.00 | n/a | n/a | |||
| TYY1_HUMAN | 2.44 | -0.47 | 1.75 | n/a | No Hit | |||
| MAF_HUMAN | n/a | 2.17 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP autism, comorbid depressive syndrome and alcohol dependence, coronary artery disease (cad), height, serum urate
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood