rs198952 chr5:115430538 T>C

Sequence
gcaccatcaagtttacccaggatg[T/C]ttaccatcagttactcatcacagt
ASB in cell types
LNCaP (prostate carcinoma) LHSAR (prostate epithelial cells) PC3(bone mets prostate adenocarcinoma)
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.67 0.25 6.7·10-51.00 1.60 n/a No Hit
FOXA1_HUMAN 2.13 -1.66 0.041.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis

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