rs198952 chr5:115430538 T>C
- Sequence
gcaccatcaagtttacccaggatg[T/C]ttaccatcagttactcatcacagt
- ASB in cell types
- LNCaP (prostate carcinoma) LHSAR (prostate epithelial cells) PC3(bone mets prostate adenocarcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.67 | 0.25 | 1.60 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.13 | -1.66 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis