rs1992154 chr3:53892060 G>T
- Sequence
gactgccctgtagtgcccgcggtt[G/T]ccagtcctctatccgacttgatcg
- ASB in cell types
- VCaP (prostate carcinoma) CD14+ monocytes 22RV1 (prostate carcinoma) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ERG_HUMAN STAG1_HUMAN HIC1_HUMAN FLI1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | n/a | 2.16 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.79 | 0.14 | 1.10 | n/a | n/a | |||
| HIC1_HUMAN | 1.91 | -1.91 | 1.00 | -4.71 | Concordant | |||
| FLI1_HUMAN | 1.89 | -1.32 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | -0.47 | 1.17 | 1.25 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood