rs199544861 chr10:38529113 G>T
- Sequence
aagggcatgtaatgtaatagaaag[G/T]accctaatggaatggaatctaatg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) HEK293T (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN CTBP1_HUMAN PKNX1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.02 | -0.33 | 2.99 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.69 | -1.58 | 3.33 | n/a | n/a | |||
| CTBP1_HUMAN | 3.15 | n/a | 2.75 | n/a | n/a | |||
| PKNX1_HUMAN | 3.38 | n/a | 3.00 | n/a | No Hit | |||
| CENPA_HUMAN | 1.26 | 0.13 | 3.00 | n/a | n/a |
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