rs2002 chr6:2990991 T>C

Sequence
gaactgtttactttcctgtaaccg[T/C]ttatccttttaactttttgcctac
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
IKZF1_HUMAN SKIL_HUMAN ILF3_HUMAN ZBT8A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN n/a 0.92 1.000.01 3.00 n/a No Hit
SKIL_HUMAN n/a 2.76 1.000.03 3.00 n/a n/a
ILF3_HUMAN n/a 1.97 1.000.04 3.00 n/a n/a
ZBT8A_HUMAN n/a 3.09 1.000.04 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Brain_Caudate_basal_ganglia,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Testis,  Thyroid,  Whole_Blood

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