rs200248298 chr10:38526890 G>T
- Sequence
aaaggaatggtgtggaatggaagg[G/T]attcgaatggaatggagtggattg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) K562 (myelogenous leukemia) CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN EP300_HUMAN LMNA_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.21 | n/a | 3.00 | n/a | No Hit | |||
| STAT1_HUMAN | 3.17 | n/a | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | 3.09 | -0.05 | 2.67 | n/a | n/a | |||
| LMNA_HUMAN | 2.77 | n/a | 3.00 | n/a | n/a | |||
| SQSTM_HUMAN | 2.22 | -0.73 | 3.00 | n/a | n/a |
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