rs2005485 chr8:57209879 T>C
- Sequence
gactcaagagggccacgttcaatg[T/C]caacctgacataaggtagtcacct
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) HEK293T (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN ZN350_HUMAN ZN174_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.40 | 2.90 | 1.37 | n/a | No Hit | |||
| ZFX_HUMAN | -0.12 | 3.08 | 1.70 | n/a | No Hit | |||
| ZN350_HUMAN | -4.12 | 4.17 | 1.00 | n/a | No Hit | |||
| ZN174_HUMAN | n/a | 4.07 | 1.00 | n/a | n/a | |||
| CHTOP_HUMAN | -3.35 | 3.24 | 1.00 | n/a | n/a |
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