rs2008808 chr19:41811262 T>G
- Sequence
cttcctccaggagctgctcctgtg[T/G]gttgatggagagtccccaaggccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN SMCA4_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 0.19 | 2.76 | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | n/a | 3.07 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | n/a | 2.58 | 1.50 | n/a | n/a | |||
| REQU_HUMAN | -5.32 | 2.86 | 2.00 | n/a | n/a | |||
| DEK_HUMAN | n/a | 2.88 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood