rs200892 chr20:1811114 C>G
- Sequence
tggcctccctgggacaggcacaca[C/G]ctggaaaccccacaaatgggaagg
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells)
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HUVEC-C (HUVEC, umbilical vein endothelial cells) | 0.31 | 1.49 | 4.00 |
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Motif analysis
No data available
Genetic associations
GRASP pci (rim area, superotemporal rim area, inferotemporal rim area, rim-to-disc area ratio, and linear cup-to-disc ratio) , total cholesterol, total cholesterol change with statins, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Lung, Nerve_Tibial, Testis