rs200967 chr6:27894349 A>G
- Sequence
tagagacggagttttaccgtcttg[A/G]ccaggctagtctcgaactcctgac
- ASB in cell types
- MOLM14 (Adult acute myeloid leukemia) HepG2 (hepatoblastoma) MM1.S (plasma cell myeloma)
- ASB for transcription factors
- RBM25_HUMAN BRD4_HUMAN CDK8_HUMAN SP130_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 2.40 | -1.31 | 2.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.34 | -0.01 | 1.84 | n/a | n/a | |||
| CDK8_HUMAN | 1.58 | -1.19 | 1.33 | n/a | n/a | |||
| SP130_HUMAN | 2.58 | -1.59 | 2.00 | n/a | n/a | |||
| NFYC_HUMAN | 2.16 | -4.62 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood