rs2029771 chr2:237652440 A>C

Sequence
aggccaagtgagatgagaagtgcc[A/C]aatggatataaaggttacagcaac
ASB in cell types
liver
ASB for transcription factors
HNF4A_HUMAN SP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HNF4A_HUMAN 2.42 -4.10 8.2·10-41.00 1.50 n/a No Hit
SP1_HUMAN 2.87 -4.94 5.6·10-31.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease,  height,  lp-pla2 mass,  paternal transmission distortion,  triglycerides
GTEx eQTL Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Muscle_Skeletal,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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