rs204047 chr1:28818612 G>T

Sequence
cagggtggctgtgaggatggagag[G/T]ctgcagggacaaaagcaggaaagg
ASB in cell types
HEK293T (embryonic kidney)
ASB for transcription factors
PRDM9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRDM9_HUMAN 3.21 -3.73 3.0·10-71.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease,  hdl cholesterol,  systolic blood pressure (sbp),  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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