rs2056156 chr2:188983742 T>C
- Sequence
ccatctcacaaaaatataaattac[T/C]gaacagtacatcatttgttgtttg
- ASB in cell types
- bipolar neuron IPSC-derived bipolar neuron GM10847 (female B-cells Lymphoblastoid Cell Lines) glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.94 | 0.36 | 1.20 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), hdl cholesterol change with statins, infant head circumference