rs2062305 chr13:42478744 G>A
- Sequence
ctccatctagaggtgatgttttgc[G/A]ctgagctaaaaagatgagctggga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM10847 (female B-cells Lymphoblastoid Cell Lines) Peyer's patch liver
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.35 | 1.16 | 1.26 | n/a | No Hit | |||
| STAG1_HUMAN | -0.56 | 0.85 | 1.28 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, crohns disease, ldl cholesterol, lumbar spine bone mineral density (bmd), lumbar spine bone mineral density (bmd) (females), lumbar spine bone mineral density (bmd) (males), total cholesterol