rs206787 chr6:32968461 A>T

Sequence
ggcgcgggctcccgccccacgaaa[A/T]gcgcgcgctccaagccccgccgcc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) spleen
ASB for transcription factors
CTCF_HUMAN BRD2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.24 1.20 1.002.4·10-3 1.32 n/a No Hit
BRD2_HUMAN 1.22 0.28 0.030.93 1.40 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP diabetic retinopathy in type 2 diabetes mellitus,  parkinsons disease,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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