rs2068334 chr1:94094159 G>A

Sequence
tgggggctttcccagacacttgac[G/A]tagcaatatccacccgaaagttga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
TF65_HUMAN IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 1.21 0.61 9.5·10-30.88 2.33 n/a No Hit
IKZF2_HUMAN 2.10 0.23 0.051.00 1.00 n/a n/a
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi) diastolic blood pressure (dbp) hypertension (early onset hypertension) obesity (body mass index (bmi)) resistance to kuru in aged women despite likely exposure
GTEx eQTL Colon_Sigmoid Colon_Transverse

Download