rs206990 chr6:167285281 C>T

Sequence
gctggcatttgtcacacgtcttcc[C/T]gtgtctaaagtgcagaattcggga
ASB in cell types
liver
ASB for transcription factors
HNF4A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HNF4A_HUMAN -5.00 3.17 1.009.9·10-5 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  hypertension (early onset hypertension),  irritible bowel syndrome,  rheumatoid arthritis
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Substantia_nigra,  Esophagus_Mucosa,  Lung,  Pituitary,  Testis

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