rs2070953 chr1:23868372 A>C
- Sequence
actctgactaacgattggcccgga[A/C]ggaaaaaggggtgggacaacctgg
- ASB in cell types
- neutrophils from periferal blood HepG2 (hepatoblastoma) CD14+ monocytes breast tumor
- ASB for transcription factors
- GABP1_HUMAN STAT1_HUMAN ESR1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | -2.90 | 1.94 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 2.69 | -5.02 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | -0.05 | 0.80 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood