rs2072638 chr6:166774862 T>C
- Sequence
gaacgctggcatgtgtgcttcttg[T/C]ctgtgacctctgaggagtcggatc
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.54 | 0.58 | 1.14 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, fasting insulin, homa-ir, ldl cholesterol, serum creatinine, total cholesterol, triglycerides, years of education