rs2072656 chr8:90001120 C>T
- Sequence
aaacacgcacttaagggataaaca[C/T]atacgactgaaaaagagtttcgcc
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) T47D (invasive ductal carcinoma) hepatocytes
- ASB for transcription factors
- CTCF_HUMAN ZBT20_HUMAN SMCA5_HUMAN ZN600_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.99 | 0.68 | 1.24 | n/a | No Hit | |||
| ZBT20_HUMAN | -2.17 | 2.52 | 1.00 | n/a | n/a | |||
| SMCA5_HUMAN | 2.18 | -1.89 | 1.00 | n/a | No Hit | |||
| ZN600_HUMAN | n/a | 2.40 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Spleen, Testis, Thyroid, Whole_Blood