rs2073192 chr20:2664350 G>A

Sequence
tttccttgccggtggggaggtcat[G/A]ggatgcgcaagcactttgtctctt
ASB in cell types
adult erythroblasts
ASB for transcription factors
HCFC1_HUMAN ESR1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HCFC1_HUMAN 2.17 n/a 2.8·10-41.00 2.00 n/a n/a
ESR1_HUMAN 2.48 -1.70 0.021.00 2.00 n/a No Hit
STAT1_HUMAN 2.01 0.23 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  fasting insulin,  homa-ir,  ldl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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