rs2074593 chr8:90001138 T>C
- Sequence
taaacacatacgactgaaaaagag[T/C]ttcgcccttgataggcagtgtatg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor OCI-LY7 (diffuse large B-cell lymphoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMCA5_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.95 | 0.64 | 1.27 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.15 | -1.86 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.52 | -0.02 | 1.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Spleen, Testis, Thyroid, Whole_Blood