rs2075310 chr3:10025967 C>T

Sequence
gggcgagacgtgaacctaggcaaa[C/T]tgacacaacgcctgcactttcttg
ASB in cell types
MDA-MB-231ERb(triple negative breast cancer)
ASB for transcription factors
STAG1_HUMAN ESR2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 1.19 0.78 0.040.86 1.00 n/a n/a
ESR2_HUMAN 2.40 -1.43 0.051.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  hdl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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