rs2077440 chr13:23889479 C>G
- Sequence
ggcctcaggacgtgggcacgttgt[C/G]gtccagagagcaagagcgtcgctc
- ASB in cell types
- SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive) foreskin keratinocyte CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- RUNX1_HUMAN RUNX3_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RUNX1_HUMAN | -2.37 | 2.68 | 1.00 | n/a | No Hit | |||
| RUNX3_HUMAN | -4.29 | 2.46 | 1.50 | 4.77 | Concordant | |||
| STAT1_HUMAN | 1.62 | 1.82 | 2.42 | n/a | No Hit |
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Motif analysis
