rs208078 chr11:31107174 G>T
- Sequence
catgggcttttaaccagcaggggg[G/T]gccacaggcttgtgattgagctct
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) WA09 (embryonic stem cells) pancreas adrenal gland
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN PMEPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.86 | 1.63 | 1.34 | 1.72 | Weak Concordant | |||
| STAG1_HUMAN | -0.53 | 1.25 | 1.25 | n/a | n/a | |||
| PMEPA_HUMAN | -3.85 | 2.23 | 1.50 | n/a | n/a |
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Motif analysis
