rs210962 chr6:135182647 C>T
- Sequence
gccgaggcgcggtgaccggacaga[C/T]cctcgcgaaggagttctaaggcga
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) CCRF-CEM (T acute lymphoblastic leukemia) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.53 | 1.74 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 0.19 | 1.20 | 1.65 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, fasting blood glucose, homa-ir, ldl cholesterol change with statins, mean corpuscular hemoglobin concentration (mchc), mean corpuscular volume (mcv), platelet count (plt), red blood cell count (rbc)
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pituitary, Whole_Blood