rs2112556 chr5:168311351 C>T
- Sequence
acaggaatctcaggcaaggaatag[C/T]ggcccctgctgctgggcaggtgcg
- ASB in cell types
- HCT-116 (colon carcinoma) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.07 | -0.58 | 1.25 | -0.45 | Weak Concordant | |||
| RAD21_HUMAN | 2.65 | n/a | 1.00 | n/a | n/a |
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Motif analysis
