rs213887 chr5:95647007 T>C
- Sequence
ggcttccgcccaggcacaggagac[T/C]caccgagcttgttcaccttgaaac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) T47D (invasive ductal carcinoma) pre- leukemia stem cells (CD34+ human cord blood cells)
- ASB for transcription factors
- PRGR_HUMAN FOXO1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | 1.21 | -0.17 | 1.95 | n/a | No Hit | |||
| FOXO1_HUMAN | 2.49 | -2.03 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Heart_Atrial_Appendage, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid