rs214085 chr11:17277109 C>T

Sequence
agcaggagagggtaggtgccaaac[C/T]gagaccctggcggggtcccttcgg
ASB in cell types
K562 (myelogenous leukemia) MV-4-11 (Childhood acute monocytic leukemia)
ASB for transcription factors
CDK9_HUMAN KMT2A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CDK9_HUMAN 2.17 1.23 0.011.00 1.00 n/a n/a
KMT2A_HUMAN 1.58 -0.58 0.051.00 1.00 n/a n/a
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Liver,  Lung,  Nerve_Tibial,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download