rs214087 chr11:17276818 G>C
- Sequence
accaggcgcagcctcgctcgccga[G/C]acccggccaggtaaggccggtggc
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- RBM25_HUMAN TYY1_HUMAN SUH_HUMAN ZN316_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 3.50 | 0.45 | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | 2.79 | -5.12 | 2.00 | n/a | No Hit | |||
| SUH_HUMAN | 2.25 | -0.64 | 2.67 | n/a | No Hit | |||
| ZN316_HUMAN | -0.49 | 2.05 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | -1.32 | 1.87 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood