ADASTRA v5.1.3
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rs214088
chr11:17276578
C
>
G
Sequence
cccaccaggctccacagcttcggc[C/G]ctcctcaccgcccgcctccaggct
ASB in cell types
K562 (myelogenous leukemia)
MOLT-4 (Adult T acute lymphoblastic leukemia)
primary B-CLL cells
HeLa (cervical adenocarcinoma)
ASB for transcription factors
BRD4_HUMAN
NELFE_HUMAN
PRDM9_HUMAN
ZN610_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN
0.23
1.31
0.88
0.02
1.29
n/a
n/a
NELFE_HUMAN
-2.71
2.64
1.00
0.02
2.00
n/a
n/a
PRDM9_HUMAN
1.68
-0.80
0.03
0.99
2.00
n/a
n/a
ZN610_HUMAN
-2.35
2.66
1.00
0.04
1.00
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
breast cancer
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Adrenal_Gland
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Cells_Cultured_fibroblasts
,
Cells_EBV-transformed_lymphocytes
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Mucosa
,
Liver
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)