rs2145670 chr10:38527827 A>G
- Sequence
agactcaaatggaatggaactgaa[A/G]tgacatgatttgtatggaatgtag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CENPA_HUMAN ZFX_HUMAN GCR_HUMAN LMNA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CENPA_HUMAN | -0.40 | 2.33 | 3.00 | n/a | n/a | |||
| ZFX_HUMAN | -0.28 | 3.04 | 2.80 | n/a | No Hit | |||
| GCR_HUMAN | n/a | 2.67 | 2.17 | n/a | No Hit | |||
| LMNA_HUMAN | n/a | 1.86 | 3.00 | n/a | n/a | |||
| ARNT_HUMAN | -4.87 | 2.16 | 2.00 | n/a | No Hit |
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