ADASTRA v5.1.3
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Bill Cipher
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adastra.autosome.org
rs215873
chr1:37514845
A
>
C
Sequence
tgcgcctgcgcgcgcggcttccgg[A/C]gacgcgtgcagcgccgtgccgagc
ASB in cell types
foreskin keratinocyte
BEAS-2B (bronchial epithelium)
22RV1 (prostate carcinoma)
fetal bone marrow-derived mononuclear cells
Show more
(+5 others)
ASB for transcription factors
GCR_HUMAN
ANDR_HUMAN
KDM6A_HUMAN
KMT2A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN
1.68
-1.00
5.7·10
-8
1.00
1.00
n/a
No Hit
ANDR_HUMAN
3.44
-2.78
1.2·10
-3
1.00
2.00
n/a
No Hit
KDM6A_HUMAN
2.97
n/a
0.01
1.00
3.00
n/a
n/a
KMT2A_HUMAN
0.21
2.19
1.00
0.03
1.12
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellum
,
Brain_Nucleus_accumbens_basal_ganglia
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Transverse
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)