rs2159234 chr7:150323333 A>T
- Sequence
gagcgcccactacggcctttggcc[A/T]ggccccctgggcgcgttccgggag
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) LNCaP C4-2B (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- BRD2_HUMAN INT11_HUMAN BRD4_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | 0.40 | 1.41 | 1.00 | n/a | n/a | |||
| INT11_HUMAN | -0.10 | 1.94 | 2.00 | n/a | n/a | |||
| BRD4_HUMAN | 0.68 | 1.13 | 1.78 | n/a | n/a | |||
| ZFX_HUMAN | 1.67 | 0.94 | 2.20 | -4.92 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood