rs2161000 chr7:134358420 A>G
- Sequence
tcttggaaactagaataacatgcc[A/G]ccaccacctggtggcaagatttgg
- ASB in cell types
- hepatocytes SK-N-SH (neuroblastoma) Peyer's patch CD14+ monocytes
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.79 | 0.07 | 1.03 | n/a | n/a | |||
| CTCF_HUMAN | 0.47 | 0.90 | 1.44 | 0.23 | Weak Concordant | |||
| STAT1_HUMAN | 1.70 | -1.11 | 2.00 | n/a | No Hit |
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Motif analysis
