rs2161001 chr7:134358423 A>G
- Sequence
tggaaactagaataacatgccacc[A/G]ccacctggtggcaagatttggaat
- ASB in cell types
- hepatocytes SK-N-SH (neuroblastoma) A549 (lung carcinoma) gastrocnemius medialis
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN SMC3_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.77 | 0.62 | 1.03 | n/a | n/a | |||
| CTCF_HUMAN | 0.52 | 0.90 | 1.43 | 5.80 | Concordant | |||
| SMC3_HUMAN | 0.05 | 1.08 | 1.97 | n/a | n/a | |||
| STAT1_HUMAN | 1.52 | -0.71 | 2.00 | n/a | No Hit |
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Motif analysis
