rs216172 chr17:2223210 G>C
- Sequence
cccctctttcaaccactgatcctt[G/C]cctcagaagccaaagtgtgaacag
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) B-cells
- ASB for transcription factors
- MYC_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYC_HUMAN | 2.47 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic root size, coronary artery calcification (cac), coronary artery disease (cad), coronary artery disease (cad) (men), coronary artery disease (cad) (women), coronary artery disease (cad) with age of onset <=50, coronary artery disease (cad) with age of onset >50, hdl cholesterol, hdl cholesterol change with statins, heart rate, ldl cholesterol, mitral annular calcium, myocardial infarction (mi), obesity with early age of onset (age >2), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood